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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca6500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NAC | ||||||||
Protein Properties | Length: 402aa MW: 44656.5 Da PI: 4.9523 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.8 | 1.1e-53 | 25 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtd+elv++yLk+k+ gk++++ ++i+e+diyk+ePwdLp +k+k++++ewyfF +d+ky +g+r nrat +gyWkatg+d+++l+ + + Dca6500.1 25 LAPGFRFHPTDQELVSYYLKRKICGKPIRF-DAISETDIYKSEPWDLPglSKLKSRDNEWYFFGVQDRKYVNGSRVNRATGNGYWKATGNDRPILH-NLR 122 579**************************9.99***************65599999****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLvfy+grap g++t+Wvmheyrl Dca6500.1 123 TVGMKKTLVFYSGRAPCGKRTNWVMHEYRL 152 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-62 | 16 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 25 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 27 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAPPSTVVVA APPSSTAVAV TATSLAPGFR FHPTDQELVS YYLKRKICGK PIRFDAISET 60 DIYKSEPWDL PGLSKLKSRD NEWYFFGVQD RKYVNGSRVN RATGNGYWKA TGNDRPILHN 120 LRTVGMKKTL VFYSGRAPCG KRTNWVMHEY RLTDEDLAKS GVPMDAYLLC KILKKSGPGF 180 KPGEQYGPFV EEEWEKDESA LVPGEEGDDD MACNDDTRIE DSVQSINNSD PNPVTICGLS 240 MEVQEIPPLC KLERGDDGPV ACTVDPEPLS LGPNKRLRQS EPDSCLSNAS VISTMRTHGP 300 CSSSTGTTNF SCALLEFPLM EAGEPEERPS PPPANVIDIN VPPSYLKLFE DLRNEIYRTS 360 IEKESLKIEV MSARTMINIL QTKIDHLTKE NDDLKKSNLR DG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 19 | 176 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694507.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
TrEMBL | A0A0J8BDY5 | 0.0 | A0A0J8BDY5_BETVU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079791 | 1e-132 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 1e-102 | NAC domain containing protein 52 |